Dear MedBioNode users,
SLURM will be restarted today 15.11.2022 at 21.00. We expect that running jobs won’t be influenced, but we cannot guarantee it.
With this the new GPU Node sx138.medunigraz.at will be integrated in our cluster and dynamic job scheduling activated.
Thanks for your cooperation.
Best regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
Dear MedBioNode cluster/RStudio server users,
First I’d like to apologize to the users receiving this information twice. I was using wrong and older version of mail distribution list.
We have managed yesterday to activate an alternative server as login node to our cluster as well as RStudio server. To login to the cluster please use now:
ssh sj211.medunigraz.at
and to use RStudio server:
http://sj211.medunigraz.at:8787
Please keep in mind to restart you R session in RStudio server by using the red power button in the upper right corner before you start working with it. We have also used this opportunity to switch to the new version of R 4.2.1. If some packages are missing, just reply to this E-Mail with the list of packages you need and they’ll be immediately deployed.
Best regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
Dear MedBioNode cluster users,
Unfortunately I have to inform you that according to the IT department the repair of the central CEPH storage system takes longer and it will not be finished before next week Tuesday (16.08.2022). This means that you cannot access following folders:
/home/cluster
/home/data
The other locations should be accessible without any problems, since they are not on CEPH.
Thanks for your patience and understanding.
Best regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Stiftingtalstrasse 24, 8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
Dear MedBioNode usres,
Since Friday there are some issues with the CEPH shared storage system (/home/cluster/…) and this is already reported to the IT department. I hope the problems will be solved soon.
Thanks for your understanding.
Best regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Stiftingtalstrasse 24, 8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
Dear MedBioNode Users,
as previously announced, we’re switching the user home folders to a new different location on another storage system. The change is planned for Friday April 26, 2022 from 09.00 until 10.00. Please coordinate your activities accordingly.
What do you need to know?
1. The new home directory location (/home/gpfs/o_xxxx) is active after you login again and important for multisession situations, all TMUX or SCREEN sessions need to be closed too.
2. New home directory is empty and in case you made some changes in your bash profiles you need to transfer them.
3. The old/previous home directory will remain under the same location (/home/cluster/o_xxxxx) including all data stored there
4. RStudio users will not see directly their own packages, although they still exist, until the path is changed in your RStudio profile, or they’re installed again.
5. Since this is new storage system, we’ll be constantly testing and monitoring how it performs.
6. Storage space is limited to 100GB per user without any exceptions. This space is only for your scripts, packages or conda environments, whereas the data needs to remain in the previous home directory location (/home/cluster/o_xxxxx)
Thank you very much for your cooperation.
Best regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Stiftingtalstrasse 24, 8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
