Dear MedBioNode users,
I have good news for you. IT department managed to solve the slurm configuration issue and sbatch is working normally again.
Regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
Dear MedbioNode users,
IT department is working on the slurm configuration issue and latest on Monday it'll be fixed. If you urgently need to run some jobs use "srun" instead.
Thanks for your understanding.
Regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
Dear MedBioNode users,
please be aware that during the cluster maintenance, we've also changed the slurm configuration. Now there are two queues (partitions):
1. cpu partition
2. gpu partition for jobs requiring GPU processing
When submitting jobs you need to specify the partition and therefore adopt your scripts by adding the parameter partition = cpu.
Best regards,
Slave
Dear MedBioNode users,
the maintenance could be finished faster than planed thanks to the efforts from the IT department (special gratitude to Michi Fladischer).
Best regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
Dear MedBioNode users,
this is just a reminder about the MedBioNode cluster maintenance planed for next week, starting on Monday 24 July 20023. Please don't start high number of jobs or ones that need long execution time (more than few hours), otherwise we cannot finish the maintenance on time. Also cluster we'll be down for some time, when we need to upgrade the master/login node (sx036). This downtime includes RStudio Server, as it runs on the same server (sx036).
Thanks for your cooperation.
Best regards,
Slave
From: Trajanoski, Slave <slave.trajanoski(a)medunigraz.at>
Sent: Thursday, 29 June 2023 08:45
To: medbionode(a)lists.medunigraz.at
Subject: [Medbionode] FW: Maintenance and upgrade of MedBioNode
Dear MedBioNode users,
I apologize for this additional E-Mail, but I've just realized that I've put the wrong week in my writing. The correct one is CW30, end of July starting with 24 July 2023.
Sorry for any inconvenience caused by this mistake.
Regards,
Slave
From: Trajanoski, Slave <slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>>
Sent: Wednesday, 28 June 2023 16:50
To: medbionode(a)lists.medunigraz.at<mailto:medbionode@lists.medunigraz.at>
Subject: [Medbionode] Maintenance and upgrade of MedBioNode
Dear MedBioNode users,
in the last week of July KW26 we're planning upgrade of the Debian operating system, as well as regular cluster maintenance. The upgrade will be performed gradually, so that we can minimize the downtime, nevertheless there will be interruption of the services including RStudio Server, Jupyter Hub and Galaxy currently operated on MedBioNode.
Please plan your work and job submission adequately and avoid starting any long execution jobs (more than 6 hours) before or during the upgrade.
Thanks for your understanding.
Kind regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
