Medbionode April 2024

medbionode@lists.medunigraz.at

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2 discussions

Invitation for Austrian BioInformatics Workshop and ZMF 20th Anniversary

by Trajanoski, Slave

Sorry for my second E-Mail today, as well as I apologize to the ones receiving this invitation again!! Dear Sir or Madam! Dear MedBioNode User! We would like to invite you to the Austrian Bioinformatics Workshop on Wednesday, July 3rd, 2024 at the Medical University Graz. Please register and submit talks and posters on https://bioinformatik.at/workshop2024.<https://bioinformatik.at/workshop2024> For more information, visit Austrian Bioinformatics Workshop 2024 in Graz | Austrian Bioinformatics Platform (bioinformatik.at).<https://bioinformatik.at/workshop2024> We also cordially invite you to the ZMF 20th Anniversary on Thursday, July 4th / Friday, July 5th 2024 at the Medical University Graz. For organizational reasons we ask you to register via this link<https://www.medunigraz.at/events/detail/zmf-20th-anniversary> until June 14th, 2024. Best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computational Bioanalytics, Center for medical research Medical University Graz Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

2 years, 2 months

Information about running java jre on MedBioNode

by Trajanoski, Slave

Herewith I'd like to share important information with you. IT department was working on some slurm jobs issue and discovered that one needs to be aware of how java is handling "tmp" folder. Java is only honoring the $TMP environment variable on windows. On Linux Java is using a hardcoded "/tmp" when creating temporary file objects. It seems that the workaround for this is to set the java.io.tmp property of the JVM to the content of $TEMPDIR environment variable at startup like this: java -Djava.io.tmpdir="$TEMPDIR" ... For further information see this stackoverflow thread: https://stackoverflow.com/questions/1924136/environment-variable-to-control… Thanks for your attention -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computational Bioanalytics, Center for medical research Medical University Graz Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

2 years, 2 months

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Medbionode April 2024