Bioinformatics

bioinformatics@lists.medunigraz.at

1 participants
35 discussions

Bioinformatics round table 22.03.2023

by Trajanoski, Slave

Dear Colleagues, we’re starting with our bioinformatics round table series for this year on 22 March 2023 from 12.00 until 13.45 at ZMF Seminar room EG86/87. You can attend it also over WebEx using the link: https://medunigraz.webex.com/medunigraz-en/j.php?MTID=mb47ac2fa9cc19cbb6e3b… Since we’re organizing sandwiches as usual please enter your presence under the link: https://www.termino.gv.at/meet/en/p/dc7f8e4704cb81c3754dd94759b70307-199960 In our meeting we’ll have two speakers presenting their work. 1. Machine listening in medicine: Is speech the new blood? Florian Pokorny 2. Data Wrangling in the Fast Lane: A Tool Comparison and Live Demonstration with RNASeq Data Natalie Bordag Use case: You have data with new structure and want to easily explore what to do with it. For that you want to find inconsistencies, explore outliers/connections in multiple plots, visualize subsets, merge/anneal multiple sources, tidy up entries, test filtrations, test calculated values, try transformations/normalizations/scaling and generate ideas on how to best continue with data analysis. Introduction: interactive data wrangling with previews and quick visualizations in dashboards enable data drill down and fast prototyping, this saves tons of times to R/Python Criteria for beauty contest: • functionality (joins, pivots, calculations, filtration, interactive) • plot types (trellis/facet, interactive highlights) • performance, response times • GUI intuitiveness, preview of operations, time to learn • reusability of workflows, sharing • Cost, data security, infrastructure (local/server) Results benchmarked against Tibco Spotfire Live demonstration with medium-complexity example (RNASeq data QC) Besides the two presentations there are additional points on our agenda: 1. Integration of the new powerful GPU node in MedBioNode cluster 2. Announcement JupyterHub server 3. Switching RStudio server over secure connection rstudio.medunigraz.at 4. IT-Infrastructure (Current State, Needs, future plans) Thanks very much in advance for your interest and cooperation. Best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computational Bioanalytics, Center for medical research Medical University Graz Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

3 years, 3 months

Bioinformatics round table

by Trajanoski, Slave

Dear colleagues, we'll have our next round table on 22 March 2023 from 12.00 until 13.45, so you can book already your calendar for it. I just wanted to ask if you have some interesting presentation, project or any other idea that we can use for the round table, please contact me so I can announce it in the official invitation. Thanks for your cooperation. Best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computational Bioanalytics, Center for medical research Medical University Graz Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

3 years, 4 months

Bioinformatics round table

by Trajanoski, Slave

Dear friends, colleagues, bioinformaticians and all other enthusiasts in data analysis tasks, I’ve setup a new date for our bioinformatics round table and it will be on 7th December 2022 from 12.00 until 14.00 at ZMF ground floor SR068/087. We have talks from MedUni IT department and Human Genetics department and Diagnostic & Research. Important: Please respond to this E-Mail if you‘re attending this event since we’re organizing sandwiches and need the number of participants for it. Since we’re organizing it as hybrid event here is the information for the WebEx connection: Bioinformatics round table Hosted by Trajanoski, Slave https://medunigraz.webex.com/medunigraz-en/j.php?MTID=mfabe7f1686bd7a870105… Wednesday, 7 Dec, 2022 12:00 | 2 hours | (UTC+01:00) Amsterdam, Berlin, Bern, Rome, Stockholm, Vienna Meeting number: 2733 454 6545 Password: PFnPfM3iz22 Join by video system Dial 27334546545(a)medunigraz.webex.com You can also dial 62.109.219.4 and enter your meeting number. Join by phone +437-203-800461 Austria Toll +43-720-815221 Austria Toll 2 Access code: 273 345 46545 Thanks and hope to see you on our bioinformatics round table. Best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computational Bioanalytics, Center for medical research Medical University Graz Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

3 years, 7 months

Cancellation Bioinformatics round table

by Trajanoski, Slave

Dear colleagues, our rector announced demonstrations for tomorrow 15.11.2022 from 11.00 until 15.00, same time as our bioinformatics round table. Therefore the round table will be canceled and postponed for later. I’ll inform you when we have the new schedule. Thank you very much for your understanding. Best regards, Slave

3 years, 7 months

Bioinformatics round table 15 November, Tuesday ZMF EG 086/087 or over WebEx

by Trajanoski, Slave

Dear colleagues, I’d like to invite you to our next Bioinformatics round table taking place on 15th November 2022 at ZMF Seminar room EG 086/087 from 12.00 until 14.00. This time we have talks from MedUni IT department, Human Genetics department and Diagnostic & Research Institute of Hygiene, Microbiology and Environmental Medicine. Important: Please respond to this E-Mail if you‘re attending this event since we’re organizing sandwiches and need the number of participants for it. We will try to have it as a hybrid event over WebEx for the ones that cannot come. Here is the information for the WebEx connection: Bioinformatics round table Hosted by Trajanoski, Slave https://medunigraz.webex.com/medunigraz-en/j.php?MTID=m478143d9331adada977a… Tuesday, 15 Nov, 2022 12:00 | 2 hours | (UTC+01:00) Amsterdam, Berlin, Bern, Rome, Stockholm, Vienna Meeting number: 2730 605 7344 Password: CTu2pXdAi48 Join by video system Dial 27306057344(a)medunigraz.webex.com You can also dial 62.109.219.4 and enter your meeting number. Join by phone +437-203-800461 Austria Toll +43-720-815221 Austria Toll 2 Access code: 273 060 57344 Thanks for your time and hope to see you next week. Best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computational Bioanalytics, Center for medical research Medical University Graz Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

3 years, 7 months

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Bioinformatics