- Bioinformatics - MedUniGraz Mailing Lists

Presentations from our first Bioinformatics round table 2026

by Trajanoski, Slave

Dear colleagues, herewith I'd like to share the presentations for JASP and Positron used during the first Bioinformatics round table in 2026. Thanks for your participation and see you next time. Best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computatinoal Bioanalyitcs, Center for medical research Medical University Graz Neue Stiftingtalstraße 6 - West Tower P 4th Floor 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

1 month, 1 week

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Invitation – Bioinformatics Round Table (Wed, 04.03.2026, 12:00–14:00)

by Trajanoski, Slave

Hi everyone, you’re warmly invited to our first Bioinformatics Round Table of 2026 on Wednesday, 04.03.2026, 12:00–14:00 (location ZMF Seminar room EG086/87). It’s a relaxed meetup to share updates, tools, and practical experiences—plus time for discussion. Because we’ll provide sandwiches, please confirm your attendance here: https://www.termino.gv.at/meet/p/b2e027adc396c4d0d50993513c0596fc-550582 Agenda: 1. Bettina Halwachs-Wenzl – New member of the Core Facility Computational Bioanalytics: Mass Spectrometry Imaging 2. Andrea Groselj-Strele – News in Data Management 3. Slave Trajanoski / Natalie Bordag – New software tools for data analysis 4. Discussion Everyone working with bioinformatics/data analysis is welcome. Feel free to bring colleagues and share the invite. We’re looking forward to seeing you there! Best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computatinoal Bioanalyitcs, Center for medical research Medical University Graz Neue Stiftingtalstraße 6 – West Tower P 4th Floor 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

1 month, 2 weeks

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Invitation + Call for Contributions – Bioinformatics Round Table (04.03.2026)

by Trajanoski, Slave

Hi everyone, Our first Bioinformatics Round Table of 2026 is happening on Wednesday, 04.03.2026, 12:00–14:00. It’s a friendly, practical meetup where we share what’s working (and what isn’t) in real-world data analysis, followed by an open discussion. What’s planned: * 1–2 short talks (10–20 minutes each) * Lightning shares or demos (3–5 minutes) * Round-table discussion and Q&A Call for contributions: We’re looking for talks, presentations, demos, show-and-tell, or discussion starters. Ideal topics include (but aren’t limited to): * Pipelines/workflows, reproducibility, and scaling * Single-cell, RNA-seq, and multi-omics analyses * QC strategies, benchmarking, and tool comparisons * Visualization, data management, and documentation * Machine learning in bioinformatics (models, pitfalls, best practices) * “Lessons learned” from recent projects or tricky data sets How to propose something: * Send a title + 2–5 lines of description * Indicate format (talk, lightning, demo) and preferred length * Just reply to this message) Everyone working with bioinformatics/data analysis is welcome—students, staff, and faculty. Feel free to bring colleagues. We’ll confirm the room and share the final agenda closer to the date. Questions or ideas? Just reply. Looking forward to kicking off the series with you! Thanks. Best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computatinoal Bioanalyitcs, Center for medical research Medical University Graz Neue Stiftingtalstraße 6 – West Tower P 4th Floor 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

2 months, 1 week

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Bioinformatics round table 2026

by Trajanoski, Slave

Hi everyone, we're excited to keep our Bioinformatics Round Table going this year! It's a relaxed space for researchers and data analysts to share practical insights, learn from one another, and swap tips. Each session will feature one or two short talks followed by open discussion. Save the dates: 1. 04.03.2026, 12:00-14:00 2. 03.06.2026, 12:00-14:00 3. 16.09.2026, 12:00-14:00 4. 02.12.2026, 09:00-11:00 Location: ZMF Seminar room EG086/87 Format: 1-2 talks + round-table discussion Audience: Anyone working with bioinformatics/data analysis (all levels welcome) If you'd like to give a short talk, propose a topic, or share a thorny analysis problem, let us know-we'd love to include it. Feel free to bring colleagues and spread the word. We'll send reminders and details closer to each date. Looking forward to seeing you there! Best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computatinoal Bioanalyitcs, Center for medical research Medical University Graz Neue Stiftingtalstraße 6 - West Tower P 4th Floor 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

3 months

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Registration for 10x Genomics Workshop

by Trajanoski, Slave

Dear reserachers, As previously advertised, our workshop "10x Data Analysis Showcases: Exploring Single Cell, Spatial and In Situ Data for Data Analysis Newcomers" will take place on Thursday, November 27, 2025 in Seminar Room 65 on Campus West in Neue Stiftingtalstraße 6. Starting now, we are accepting registrations for the course. As seats are limited, we kindly ask you to register through our registration form by Wednesday, November 19. Seats will be assigned on a first come first served basis. You will receive an email confirming your participation in the workshop together with the finalised agenda shortly after the registration deadline. In the link below, you will find the registration form including the agenda: Register here: 10x data analysis showcases workshop <https://docs.google.com/forms/d/e/1FAIpQLSdE8JEsqO0SN8z51Vdcu4tU_Ev5iII0ouR…> We are looking forward to seeing you there! All the best, Johanna on behalf of the teams of Core Facilities - Molecular Biology & Computational Bioanalytics and 10x Genomics -- Dr. Johanna Gesperger Account Executive - Austria johanna.gesperger(a)10xgenomics.com<mailto:johanna.gesperger@10xgenomics.com> mobile +43 660 6249235 [Das Bild wurde vom Absender entfernt. 10x Genomics]<https://www.10xgenomics.com/> 10x Genomics B.V. Sylviusweg 62 2333 BE Leiden The Netherlands | 10xgenomics.com<https://www.10xgenomics.com/>

4 months, 4 weeks

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Last Bioinformatics Round Table of the Year – Special Format + 10x Genomics Workshop

by Trajanoski, Slave

Dear colleagues, We would like to invite you to our last Bioinformatics Round Table of the year, which will take place in a slightly different format: 🗓 Date: 27.11.2025 ⏰ Time: 09.00 Round Table starts before the 10x Genomics Workshop 📍 Location: MC2.Q.01.027 (SR 65) on Campus West, Neue Stiftingtalstraße 6, 8010 Graz This time, the Round Table will serve as an open, informal space to exchange ideas, discuss analysis challenges, and share ongoing work. If you would like to: * briefly present a project, * raise a question about data analysis, HPC usage, or any related topic, or * initiate an open discussion on a specific issue, please feel free to let us know. Short, spontaneous contributions are very welcome. After the Round Table, you are warmly invited to stay for the 10x Genomics Workshop. A separate email with the workshop registration link will follow shortly. We look forward to seeing you there and wrapping up the year together with insightful discussions. Best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computational Bioanalytics, Center for medical research Medical University Graz Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

5 months

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3rd Bioinformatics round table

by Trajanoski, Slave

Hi everyone, We’re happy to invite you to our next Bioinformatics Round Table on 📅 Tuesday, September 16th, 13:00–15:00 📍 Seminar Room ZMF EG086/087 Agenda: 1. Ayu Hutami Syarif: Integrated Single-Cell and Spatial Transcriptomics Analysis of Immune Cells Uncovers Preserved Ratio Impaired Spirometry (PRISm) Associated Cellular and Molecular Signature 2. Peter Ulz: Bioinformatics Research in the Biotechnology Industry setting 3. Updates on recent changes in the MedBioNode HPC environment and Galaxy 4. General discussion Since the Round Table takes place during lunchtime, we’ll be offering sandwiches. 👉 Please register by September 5th via https://www.termino.gv.at/meet/p/e318fe7c11269360cae57aa8b5080515-483530 , so we can plan the order accordingly. We look forward to an engaging discussion — and seeing many of you there! Apologies to all receiving this E-Mail again. Best, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computational Bioanalytics, Center for medical research Medical University Graz Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

7 months, 2 weeks

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Save the Date: Bioinformatics Round Table – Tuesday September 16, 2025

by Trajanoski, Slave

Hi everyone, We will be holding our next Bioinformatics Round Table on Tuesday, September 16, 2025 from 13.00 until 15.00, which I am excited to announce! Getting together, sharing ideas, and learning from each other in a laid-back setting are all made possible by these get-togethers. Have something to share? For this round, we're seeking a couple 20-minute presentations. Your discussion could focus on: An intriguing project you've been engaged in A tool or pipeline that you have developed or found useful A technique or strategy that could be helpful to others Something you're struggling with that might lead to a fascinating conversation Feel free to bring ideas that are still in the process of being developed, as the purpose is to share experiences rather than give a flawless, finished discussion. If you are interested in presenting, do send me a brief email with: A title or topic We’ll share the final agenda closer to the day, but for now, mark your calendars and think about what you might contribute. Looking forward to seeing you there! Best, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computational Bioanalytics, Center for medical research Medical University Graz Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

8 months, 1 week

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Reminder: Bioinformatics round table

by Trajanoski, Slave

Hi everybody, this is just a friendly reminder, if you didn't register for our next bioinformatics round table. Date: Wednesday, 04 June Time: 13:00 - 15:00 Location: ZMF ground floor Seminar Room EG086 Coffee and cake will be provided - come hungry for both knowledge and sweets! Agenda: 1. Genome-wide Association Study identifies ABCG1 as a susceptibility locus for Tick-Borne Encephalitis from Piyush Gampawar 2. Open-source search module for web-based data-discovery in iRODS from Georgi Diakov 3. (tentative) Simon Orlob will present * vitabel - python package for interactive visualization of timeseries data * approach to work collaboratively (presenting scripts to setup projects for multiple users) 4. Open discussion and networking opportunities Please confirm your attendance over the link: https://www.termino.gv.at/meet/p/b1cb95ade48e695cbb504d9e0c4a8992-456539 Thanks. Best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computational Bioanalytics, Center for medical research Medical University Graz Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

10 months, 3 weeks

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2nd Bioinformatics round table 4th June 2025 13:00-15:00

by Trajanoski, Slave

2nd Bioinformatics Round Table Join us for an engaging afternoon of science, discussion, and community at our 2nd Bioinformatics Round Table. This session will feature three insightful presentations from researchers in the field. Date: Wednesday, 04 June Time: 13:00 - 15:00 Location: ZMF ground floor Seminar Room EG086 Coffee and cake will be provided - come hungry for both knowledge and sweets! Agenda: 1. Genome-wide Association Study identifies ABCG1 as a susceptibility locus for Tick-Borne Encephalitis from Piyush Gampawar 2. Open-source search module for web-based data-discovery in iRODS from Georgi Diakov 3. (tentative) Simon Orlob will present * vitabel - python package for interactive visualization of timeseries data * approach to work collaboratively (presenting scripts to setup projects for multiple users) 4. Open discussion and networking opportunities Please confirm your attendance over the link: https://www.termino.gv.at/meet/p/b1cb95ade48e695cbb504d9e0c4a8992-456539 We look forward to seeing you there! Warm regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computational Bioanalytics, Center for medical research Medical University Graz Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

11 months

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2026

2025

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2022

Bioinformatics