Greetings, coworkers
On our last meeting I was unable to announce our plans for the upcoming bioinformatics round table due to time constraints. We have a unique chance this year to host our next Bioinformatics round table in a different setting. We've been involved in the Austria Bioinformatics effort for a number of years, which hosts annual Austrian Bioinformatics Workshops. This year, it will take place in our Medical University Graz, and I'm happy to extend an invitation to you to come.
In addition, we would like to highlight that the Austrian Bioinformatics Workshop will be followed by the 20 Years ZMF Anniversary. As a result, kindly take your time and join us in celebrating this accomplishment.
You can gather more information in the following invitation, as well as in the attachments:
Dear Sir or Madam!
Dear MedBioNode User!
We would like to invite you to the Austrian Bioinformatics Workshop on Wednesday, July 3rd, 2024 at the Medical University Graz.
Please register and submit talks and posters on https://bioinformatik.at/workshop2024.<https://bioinformatik.at/workshop2024>
For more information, visit Austrian Bioinformatics Workshop 2024 in Graz | Austrian Bioinformatics Platform (bioinformatik.at).<https://bioinformatik.at/workshop2024>
We also cordially invite you to the ZMF 20th Anniversary on Thursday, July 4th / Friday, July 5th 2024 at the Medical University Graz.
For organizational reasons we ask you to register via this link<https://www.medunigraz.at/events/detail/zmf-20th-anniversary> until June 14th, 2024.
Best regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
Dear colleagues,
there is an open PhD position in the fields of bioinformatics and cancer research at the Medical University Graz.
The PhD project is part of an exciting consortium initiative, focusing on the immunomodulatory effects of the NR4A1/p53 axis in diffuse large B cell lymphoma.
Application deadline: March 24, 2024
Contact person is:
Univ.-Ass. Dipl.-Ing. Julia Feichtinger, MSc PhD
Division of Cell Biology, Histology and Embryology Gottfried Schatz Research Center for Cell Signaling, Metabolism and Aging
Medical University of Graz
Neue Stiftingtalstrasse 6
8010 Graz, Austria
Tel.: +43 316 385 - 71899
Please find the details in the attachment and forward this information to additional researchers that may have interest in applying for it.
Regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
Dear colleagues, researches and friends of big scale biological data analysis,
I’m glad to invite you to our first bioinformatics round table for this year. As in my previous E-Mail announced, it will be on 20.03.2023 Wednesday from 12.00 until 14.00 as usual at ZMF ground floor SR EG086/087. This time we have two presenters:
1. Leonida Lamp “Unmasking lipid double bond positions in routine LC-MS/MS data”, group Jürgen Hartler, Institute of Pharmaceutical Sciences/Pharmaceutical Chemistry at the University of Graz;
2. Robert Harb "Diffusion-based generation of Histopathological Whole Slide Images at a Gigapixel scale", Diagnostic and Research Institute of Pathology Medical University Graz
After the talks we plan to cover MedUni Graz internal topics, IT Roadmap, data management, MedBioNode cluster, future plans and user initiated discussions.
As always, since the meeting is during lunch time we’re providing sandwiches and refreshments. Therefore for organization purposes please confirm your attendance over the link:
https://www.termino.gv.at/meet/p/ff38702d6814fd51aa360642ec2bef24-306291
This will be hybrid event, offering possibility to follow the talks also online over the following connection:
Join information
Meeting link:
https://medunigraz.webex.com/medunigraz-en/j.php?MTID=mfe5ce00b04f3e17f2887…
Meeting number:
2732 151 8908
Password:
yhHJkayu633
Host key:
657878
Join by video system
Dial 27321518908(a)medunigraz.webex.com
You can also dial 62.109.219.4 and enter your meeting number.
Join by phone
+437-203-800461 Austria Toll
+43-720-815221 Austria Toll 2
Access code: 2732 151 8908
Host PIN: 4927
Thanks very much for your attention and hope to see/meet many of you!!!
Best regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
Dear colleagues,
as always is the case we're organizing also this year our bioinformatics round tables.
Herewith I'd like to announce with pleasure the first round table planned for 20 March 2024 from 12.00 until 14.00, so you can already book your calendar for it. As usual we need contribution for the round table in form of some interesting presentation, project, maybe visit of a conference, even sharing some tool/pipeline for data analysis with our community or any other idea that we can use in our program. Please contact me so I can announce it in the official invitation.
Thanks for your cooperation.
Best regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
Dear colleagues,
herewith I'd like to announce our next Bioinformatics round table (second one for this year) taking place at the Center for medical research Seminar rooms EG086 and EG086 on 5th July 2023 Wednesday from 12.00 until 14.00. We're again using the hybrid format, so that also some of you can follow it online over WebEx. In such case here is the information how to join this meeting over WebEx:
Meeting link:
https://medunigraz.webex.com/join/slave.trajanoski
Meeting number:
844 734 008
Host key:
4927
Agenda:
Bioinformatics round table
Join by phone
+437-203-800461 Austria Toll
+43-720-815221 Austria Toll 2
Access code: 844 734 008
Host PIN: 4927
As usual we'll be starting with two presentations:
1. Pedro Alejandro Sánchez Murcia Computer-Aided Molecular Design Lab will present their Virtual screening method with the title :"Streamlining Virtual Screening in the CAMDgraz laboratory: Developing an Efficient Pipeline for Accelerated Drug Discovery"
2. phylociraptor - Rapid phylogenomic tree calculator Philipp Resl and Christoph Hahn from Institute of Biology, University of Graz
(big thanks to both speakers for their readiness to present their work)
and we'll continue with:
1. News and changes in HPC MedBioNode
2. General discussion
Since we're organizing sandwiches, you'll have to register by simple replying to this E-Mail with confirmation of your presence.
Thanks for your interest and hope to see you.
Best regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
Dear bioinformaticians, computational biologists and life science data analysists,
we're planning and organizing our next bioinformatics round table for 5th July 2023 from 12.00 until 14.00. Herewith I'd like to invite you for your participation to present your work, project, interesting method you've learned or visit of a conference. Please send me an E-Mail if you can give short presentation, so I can included it in our agenda for the next round table. Reply to this E-Mail if you have some topics to discuss too.
Thanks very much in advance.
Best regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
If you're coming to the Bioinformatics round table please don't forget to enter your participation under the link:
https://www.termino.gv.at/meet/en/p/dc7f8e4704cb81c3754dd94759b70307-199960
Thanks in advance.
Best regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
Dear Colleagues,
we’re starting with our bioinformatics round table series for this year on 22 March 2023 from 12.00 until 13.45 at ZMF Seminar room EG86/87.
You can attend it also over WebEx using the link: https://medunigraz.webex.com/medunigraz-en/j.php?MTID=mb47ac2fa9cc19cbb6e3b…
Since we’re organizing sandwiches as usual please enter your presence under the link:
https://www.termino.gv.at/meet/en/p/dc7f8e4704cb81c3754dd94759b70307-199960
In our meeting we’ll have two speakers presenting their work.
1. Machine listening in medicine: Is speech the new blood? Florian Pokorny
2. Data Wrangling in the Fast Lane: A Tool Comparison and Live Demonstration with RNASeq Data Natalie Bordag
Use case: You have data with new structure and want to easily explore what to do with it. For that you want to find inconsistencies, explore outliers/connections in multiple plots, visualize subsets, merge/anneal multiple sources, tidy up entries, test filtrations, test calculated values, try transformations/normalizations/scaling and generate ideas on how to best continue with data analysis.
Introduction: interactive data wrangling with previews and quick visualizations in dashboards enable data drill down and fast prototyping, this saves tons of times to R/Python
Criteria for beauty contest:
• functionality (joins, pivots, calculations, filtration, interactive)
• plot types (trellis/facet, interactive highlights)
• performance, response times
• GUI intuitiveness, preview of operations, time to learn
• reusability of workflows, sharing
• Cost, data security, infrastructure (local/server)
Results benchmarked against Tibco Spotfire
Live demonstration with medium-complexity example (RNASeq data QC)
Besides the two presentations there are additional points on our agenda:
1. Integration of the new powerful GPU node in MedBioNode cluster
2. Announcement JupyterHub server
3. Switching RStudio server over secure connection rstudio.medunigraz.at
4. IT-Infrastructure (Current State, Needs, future plans)
Thanks very much in advance for your interest and cooperation.
Best regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
Dear colleagues,
we'll have our next round table on 22 March 2023 from 12.00 until 13.45, so you can book already your calendar for it. I just wanted to ask if you have some interesting presentation, project or any other idea that we can use for the round table, please contact me so I can announce it in the official invitation.
Thanks for your cooperation.
Best regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
Dear friends, colleagues, bioinformaticians and all other enthusiasts in data analysis tasks,
I’ve setup a new date for our bioinformatics round table and it will be on 7th December 2022 from 12.00 until 14.00 at ZMF ground floor SR068/087. We have talks from MedUni IT department and Human Genetics department and Diagnostic & Research.
Important: Please respond to this E-Mail if you‘re attending this event since we’re organizing sandwiches and need the number of participants for it.
Since we’re organizing it as hybrid event here is the information for the WebEx connection:
Bioinformatics round table
Hosted by Trajanoski, Slave
https://medunigraz.webex.com/medunigraz-en/j.php?MTID=mfabe7f1686bd7a870105…
Wednesday, 7 Dec, 2022 12:00 | 2 hours | (UTC+01:00) Amsterdam, Berlin, Bern, Rome, Stockholm, Vienna
Meeting number: 2733 454 6545
Password: PFnPfM3iz22
Join by video system
Dial 27334546545(a)medunigraz.webex.com
You can also dial 62.109.219.4 and enter your meeting number.
Join by phone
+437-203-800461 Austria Toll
+43-720-815221 Austria Toll 2
Access code: 273 345 46545
Thanks and hope to see you on our bioinformatics round table.
Best regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
