- Bioinformatics - MedUniGraz Mailing Lists

by Trajanoski, Slave

Hi everyone, we’re organizing our second Bioinformatics round table today from 12.00 until 14.00 in hybrid format, meaning you can also join online over the following WebEx link (herewith you’ll have to organize coffee and cake by yourself 😊): Bioinformatics round table Hosted by Trajanoski, Slave https://medunigraz.webex.com/medunigraz-en/j.php?MTID=m931698541e752f99533e… Mittwoch, 3. Juni 2026 11:45 | 1 hour | (UTC+02:00) Amsterdam, Berlin, Bern, Rome, Stockholm, Vienna Meeting number: 2794 263 6147 Password: zyJPcR3gt99 Agenda: Omero Join by video system Dial 27942636147(a)medunigraz.webex.com You can also dial 62.109.219.4 and enter your meeting number. Join by phone +437-203-800461 Austria Toll +43-720-815221 Austria Toll 2 Access code: 279 426 36147 Glad to meet you also in this way. Thanks, and best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computational Bioanalytics, Center for medical research Medical University Graz Neue Stiftingtalstraße 6 – West Tower P 4th Floor 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

3 weeks, 3 days

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Invitation – Second Bioinformatics Round Table (Wed, 03.06.2026, 12:00–14:00)

by Trajanoski, Slave

Hi everyone, you’re invited to our second Bioinformatics Round Table of 2026 on Wednesday, 03.06.2026, 12:00–14:00 (location ZMF seminar room EG086/087). It’s a relaxed meetup to share practical insights and swap experiences across our bioinformatics community. Plan for the session: 1. Andrea Groselj-Strele – News in Data Management 2. Peter Ulz – Professorship plans 3. Updates and Practices: * 10x Genomics single-cell data analysis: news and changes * Documenting bioinformatics data analysis and/or pipeline development – a community question to spark discussion (bring your approaches, templates, and pain points) 4. Open discussion and Q&A All colleagues working with data analysis are welcome—feel free to bring a friend or forward the invite. Please use the following link for your registration: https://www.termino.gv.at/meet/p/32e47e064161ce1a097fc4833aa1f6e8-586132 Looking forward to seeing you there! Best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computational Bioanalytics, Center for medical research Medical University Graz Neue Stiftingtalstraße 6 – West Tower P 4th Floor 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

1 month

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Save the date + Call for Contributions – Bioinformatics Round Table (03.06.2026)

by Trajanoski, Slave

Hi everyone, Our second Bioinformatics Round Table of 2026 is coming up on Wednesday, 03.06.2026, 12:00–14:00 (location TBA, on campus). As always, it’s an informal get-together for everyone working on bioinformatics/data analysis—short inputs, practical takeaways, and plenty of time for discussion. We’re currently looking for contributions for this session: * Short talk / presentation (10–20 min) * Lightning update (3–5 min) * Demo / workflow show-and-tell * Discussion starter (a tricky dataset, method, or “lessons learned” topic) Possible topics (just ideas—anything relevant is welcome): * RNA-seq, single-cell, multi-omics, proteomics/metabolomics analyses * Pipelines, workflow management, reproducibility, HPC/cloud * QC, benchmarking, tool comparisons * Data management, FAIR, documentation, visualization * ML/AI for biology: what worked, what didn’t If you’d like to contribute, please send Title on what you’d like to cover. Reply to this message by 17.05.2026 so we can finalize the agenda. Feel free to forward this to colleagues—looking forward to another great round table! Regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computatinoal Bioanalyitcs, Center for medical research Medical University Graz Neue Stiftingtalstraße 6 – West Tower P 4th Floor 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

1 month, 3 weeks

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Presentations from our first Bioinformatics round table 2026

by Trajanoski, Slave

Dear colleagues, herewith I'd like to share the presentations for JASP and Positron used during the first Bioinformatics round table in 2026. Thanks for your participation and see you next time. Best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computatinoal Bioanalyitcs, Center for medical research Medical University Graz Neue Stiftingtalstraße 6 - West Tower P 4th Floor 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

3 months, 3 weeks

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Invitation – Bioinformatics Round Table (Wed, 04.03.2026, 12:00–14:00)

by Trajanoski, Slave

Hi everyone, you’re warmly invited to our first Bioinformatics Round Table of 2026 on Wednesday, 04.03.2026, 12:00–14:00 (location ZMF Seminar room EG086/87). It’s a relaxed meetup to share updates, tools, and practical experiences—plus time for discussion. Because we’ll provide sandwiches, please confirm your attendance here: https://www.termino.gv.at/meet/p/b2e027adc396c4d0d50993513c0596fc-550582 Agenda: 1. Bettina Halwachs-Wenzl – New member of the Core Facility Computational Bioanalytics: Mass Spectrometry Imaging 2. Andrea Groselj-Strele – News in Data Management 3. Slave Trajanoski / Natalie Bordag – New software tools for data analysis 4. Discussion Everyone working with bioinformatics/data analysis is welcome. Feel free to bring colleagues and share the invite. We’re looking forward to seeing you there! Best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computatinoal Bioanalyitcs, Center for medical research Medical University Graz Neue Stiftingtalstraße 6 – West Tower P 4th Floor 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

3 months, 3 weeks

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Invitation + Call for Contributions – Bioinformatics Round Table (04.03.2026)

by Trajanoski, Slave

Hi everyone, Our first Bioinformatics Round Table of 2026 is happening on Wednesday, 04.03.2026, 12:00–14:00. It’s a friendly, practical meetup where we share what’s working (and what isn’t) in real-world data analysis, followed by an open discussion. What’s planned: * 1–2 short talks (10–20 minutes each) * Lightning shares or demos (3–5 minutes) * Round-table discussion and Q&A Call for contributions: We’re looking for talks, presentations, demos, show-and-tell, or discussion starters. Ideal topics include (but aren’t limited to): * Pipelines/workflows, reproducibility, and scaling * Single-cell, RNA-seq, and multi-omics analyses * QC strategies, benchmarking, and tool comparisons * Visualization, data management, and documentation * Machine learning in bioinformatics (models, pitfalls, best practices) * “Lessons learned” from recent projects or tricky data sets How to propose something: * Send a title + 2–5 lines of description * Indicate format (talk, lightning, demo) and preferred length * Just reply to this message) Everyone working with bioinformatics/data analysis is welcome—students, staff, and faculty. Feel free to bring colleagues. We’ll confirm the room and share the final agenda closer to the date. Questions or ideas? Just reply. Looking forward to kicking off the series with you! Thanks. Best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computatinoal Bioanalyitcs, Center for medical research Medical University Graz Neue Stiftingtalstraße 6 – West Tower P 4th Floor 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

4 months, 3 weeks

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Bioinformatics round table 2026

by Trajanoski, Slave

Hi everyone, we're excited to keep our Bioinformatics Round Table going this year! It's a relaxed space for researchers and data analysts to share practical insights, learn from one another, and swap tips. Each session will feature one or two short talks followed by open discussion. Save the dates: 1. 04.03.2026, 12:00-14:00 2. 03.06.2026, 12:00-14:00 3. 16.09.2026, 12:00-14:00 4. 02.12.2026, 09:00-11:00 Location: ZMF Seminar room EG086/87 Format: 1-2 talks + round-table discussion Audience: Anyone working with bioinformatics/data analysis (all levels welcome) If you'd like to give a short talk, propose a topic, or share a thorny analysis problem, let us know-we'd love to include it. Feel free to bring colleagues and spread the word. We'll send reminders and details closer to each date. Looking forward to seeing you there! Best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computatinoal Bioanalyitcs, Center for medical research Medical University Graz Neue Stiftingtalstraße 6 - West Tower P 4th Floor 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

5 months, 2 weeks

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Registration for 10x Genomics Workshop

by Trajanoski, Slave

Dear reserachers, As previously advertised, our workshop "10x Data Analysis Showcases: Exploring Single Cell, Spatial and In Situ Data for Data Analysis Newcomers" will take place on Thursday, November 27, 2025 in Seminar Room 65 on Campus West in Neue Stiftingtalstraße 6. Starting now, we are accepting registrations for the course. As seats are limited, we kindly ask you to register through our registration form by Wednesday, November 19. Seats will be assigned on a first come first served basis. You will receive an email confirming your participation in the workshop together with the finalised agenda shortly after the registration deadline. In the link below, you will find the registration form including the agenda: Register here: 10x data analysis showcases workshop <https://docs.google.com/forms/d/e/1FAIpQLSdE8JEsqO0SN8z51Vdcu4tU_Ev5iII0ouR…> We are looking forward to seeing you there! All the best, Johanna on behalf of the teams of Core Facilities - Molecular Biology & Computational Bioanalytics and 10x Genomics -- Dr. Johanna Gesperger Account Executive - Austria johanna.gesperger(a)10xgenomics.com<mailto:johanna.gesperger@10xgenomics.com> mobile +43 660 6249235 [Das Bild wurde vom Absender entfernt. 10x Genomics]<https://www.10xgenomics.com/> 10x Genomics B.V. Sylviusweg 62 2333 BE Leiden The Netherlands | 10xgenomics.com<https://www.10xgenomics.com/>

7 months, 1 week

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Last Bioinformatics Round Table of the Year – Special Format + 10x Genomics Workshop

by Trajanoski, Slave

Dear colleagues, We would like to invite you to our last Bioinformatics Round Table of the year, which will take place in a slightly different format: 🗓 Date: 27.11.2025 ⏰ Time: 09.00 Round Table starts before the 10x Genomics Workshop 📍 Location: MC2.Q.01.027 (SR 65) on Campus West, Neue Stiftingtalstraße 6, 8010 Graz This time, the Round Table will serve as an open, informal space to exchange ideas, discuss analysis challenges, and share ongoing work. If you would like to: * briefly present a project, * raise a question about data analysis, HPC usage, or any related topic, or * initiate an open discussion on a specific issue, please feel free to let us know. Short, spontaneous contributions are very welcome. After the Round Table, you are warmly invited to stay for the 10x Genomics Workshop. A separate email with the workshop registration link will follow shortly. We look forward to seeing you there and wrapping up the year together with insightful discussions. Best regards, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computational Bioanalytics, Center for medical research Medical University Graz Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

7 months, 2 weeks

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3rd Bioinformatics round table

by Trajanoski, Slave

Hi everyone, We’re happy to invite you to our next Bioinformatics Round Table on 📅 Tuesday, September 16th, 13:00–15:00 📍 Seminar Room ZMF EG086/087 Agenda: 1. Ayu Hutami Syarif: Integrated Single-Cell and Spatial Transcriptomics Analysis of Immune Cells Uncovers Preserved Ratio Impaired Spirometry (PRISm) Associated Cellular and Molecular Signature 2. Peter Ulz: Bioinformatics Research in the Biotechnology Industry setting 3. Updates on recent changes in the MedBioNode HPC environment and Galaxy 4. General discussion Since the Round Table takes place during lunchtime, we’ll be offering sandwiches. 👉 Please register by September 5th via https://www.termino.gv.at/meet/p/e318fe7c11269360cae57aa8b5080515-483530 , so we can plan the order accordingly. We look forward to an engaging discussion — and seeing many of you there! Apologies to all receiving this E-Mail again. Best, Slave -- Slave Trajanoski, Phd Senior Scientist Bioinformatics CF Computational Bioanalytics, Center for medical research Medical University Graz Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock 8010 Graz Tel. +43 316 385 73024 E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>

10 months

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Bioinformatics