Dear MedBioNode users,
Please monitor the execution of your tasks and the amount of resources (CPUs & RAM) you are using while using any of our login nodes (primary sx036 and sj211, which you should only use if sx036 is not available!). Adjust your tasks as necessary to leave some resources available for the others as well, especially when running R code in Rstudio Server or uploading data using SFTP (FileZilla). To view CPU load while uploading data, enable the Remote monitoring option in MobXTerm (see below), as these processes are not easily accessible via the htop command.
As you can see, we presently have a large number of people online (hopefully the most of them utilize Slurm), therefore it would be great to share the cluster fairly without interfering with one another.
I appreciate your understanding and co-operation.
Best,
Marija
[cid:image003.jpg@01D9CB80.3CE2A8C0]
Marija Đurđević, MSc
PhD, Diagnostic & Research Center for Molecular BioMedicine
Institute of Pathology
Bioinformatician, Core Facility Computational Bioanalytics
Center for Medical Research
Medical University Graz
Center for Medical Research
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
A-8010 Graz
Austria
We’re starting the day with great news. Thanks to the support from IT department the problem with the booting of the login node sx036 could be quickly resolved and you can proceed with your work normally. RStudio server is also functioning again.
Regards,
Slave
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Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
Dear MedBioNode users,
please use temporarily sj211.medunigraz.at as login node, until sx036 is online again. I'm looking for some solution regarding RStudio server.
Regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
Dear MedBioNode users,
unfortunately since today in the morning login node sx036 is down. This involves also RStudio Server, because it runs on the same machine. The issue is already reported to the IT department, but we cannot estimate how long it'll take until the server is repaired.
Best regards,
Slave
--
Slave Trajanoski, Phd
Senior Scientist Bioinformatics
CF Computational Bioanalytics, Center for medical research
Medical University Graz
Neue Stiftingtalstraße 6-West, Turm/Stiege:P, 4.Stock
8010 Graz
Tel. +43 316 385 73024
E-Mail: slave.trajanoski(a)medunigraz.at<mailto:slave.trajanoski@medunigraz.at>
